dietary proteins catabolism

No.13886078 ViewReplyOriginalReport
they say a calorie is a calorie but something's not quite right, if the proteins we eat get reassembled to build muscles, then surely we are not extracting energy from those specific proteins, so my realization is that only excess amino acids undergo catabolism to produce energy
which would make counting calories all the much harder, because how the hell does one know how many proteins is too much?